miRBase entry: rno-mir-136

Stem-loop rno-mir-136


Accession
MI0000909
Description
Rattus norvegicus rno-mir-136 precursor miRNA
Gene family
MIPF0000099; mir-136

Literature search
8 open access papers mention rno-mir-136
(14 sentences)

Sequence

862681 reads, 878 reads per million, 476 experiments
ugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuaagcucCAUCAUCGUCUCAAAUGAGUCUucagaggguucu
.((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).

Structure
u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuUCUGAG UAAAC   GCUACUACcu   a
u        a        -     UCU          cga 


Annotation confidence High
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Genome context
chr6: 133716761-133716842 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from rno-mir-136
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-136-5p

Accession MIMAT0000842
Description Rattus norvegicus rno-miR-136-5p mature miRNA
Sequence 15 - ACUCCAUUUGUUUUGAUGAUGGA - 37
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-136-3p

Accession MIMAT0004733
Description Rattus norvegicus rno-miR-136-3p mature miRNA
Sequence 49 - CAUCAUCGUCUCAAAUGAGUCU - 70
Evidence experimental
cloned [2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68