miRBase entry: rno-mir-133a

Stem-loop rno-mir-133a


Accession
MI0000906
Description
Rattus norvegicus rno-mir-133a precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
98 open access papers mention rno-mir-133a
(673 sentences)

Sequence

31466817 reads, 20425 reads per million, 491 experiments
caaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugcauuga
((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).

Structure
-      uuu    a       AA  U  A        gccuc 
 caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 


Annotation confidence High
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Genome context
chr18: 2052478-2052564 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-133a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-133a-5p

Accession MIMAT0017124
Description Rattus norvegicus rno-miR-133a-5p mature miRNA
Sequence 15 - AGCUGGUAAAAUGGAACCAAAU - 36
Evidence experimental
SOLiD [2]

Mature rno-miR-133a-3p

Accession MIMAT0000839
Description Rattus norvegicus rno-miR-133a-3p mature miRNA
Sequence 52 - UUUGGUCCCCUUCAACCAGCUG - 73
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249