Stem-loop rno-mir-130b

Accession

MI0000904

Description

Rattus norvegicus rno-mir-130b precursor miRNA

Gene family

MIPF0000034; mir-130

Literature search

22 open access papers mention rno-mir-130b
(150 sentences)

Sequence

13834 reads, 72 reads per million, 450 experiments

ggcuugcuggacACUCUUUCCCUGUUGCACUACUgugggccucugggaagCAGUGCAAUGAUGAAAGGGCAUccgucaggcc
((((((.((((..(((((((..(((((((((.((.....((...))..)).)))))))))..)))))))..)))).))))))

Structure

      c    cA       CC         A  guggg  u 
ggcuug ugga  CUCUUUC  UGUUGCACU CU     cc  
|||||| ||||  |||||||  ||||||||| ||     || c
ccggac gccU  GGGAAAG  GUAACGUGA ga     gg  
      u    AC       UA         C  ---ag  u 

Annotation confidence High

Genome context

chr11: 88129773-88129854 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-130b

Mature rno-miR-130b-5p

• Accession: MIMAT0017122
• Description: Rattus norvegicus rno-miR-130b-5p mature miRNA
• Sequence: 13 - ACUCUUUCCCUGUUGCACUACU - 34
• Evidence: experimental ; SOLiD [4]

Mature rno-miR-130b-3p

• Accession: MIMAT0000837
• Description: Rattus norvegicus rno-miR-130b-3p mature miRNA
• Sequence: 51 - CAGUGCAAUGAUGAAAGGGCAU - 72
• Evidence: experimental ; cloned [1-3], Northern [1-2], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


4. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249