Stem-loop sequence rno-mir-128-1

AccessionMI0000900 (change log)
Previous IDsrno-mir-128a
DescriptionRattus norvegicus miR-128-1 stem-loop
Gene family MIPF0000048; mir-128
Literature search

17 open access papers mention rno-mir-128-1
(63 sentences)

   u    u      uuc       uag      cu       u 
5'  gagc guugga   ggggccg   cacugu  gagaggu u
    |||| ||||||   |||||||   ||||||  |||||||  
3'  uucg cgacuu   cucuggc   gugaca  cucuuua a
   c    u      uuu       caa      --       c 
Get sequence
Deep sequencing
4473418 reads, 2.97e+03 reads per million, 495 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

The most commonly cloned mature sequences derived from the previously annotated mir-128a and mir-128b were shown by Landgraf et al to be identical [3]. The sequences are therefore renamed mir-128-1 and mir-128-2.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr13: 44916534-44916615 [+]
ENSRNOT00000005372 ; R3hdm1-201; intron 19
Database links

Mature sequence rno-miR-128-1-5p

Accession MIMAT0017118
Previous IDsrno-miR-128-1*

15 - 


 - 35

Get sequence
Deep sequencing14143 reads, 384 experiments
Evidence experimental; SOLiD [3]
Predicted targets

Mature sequence rno-miR-128-3p

Accession MIMAT0000834
Previous IDsrno-miR-128a;rno-miR-128

50 - 


 - 70

Get sequence
Deep sequencing8895221 reads, 495 experiments
Evidence experimental; cloned [1-4], Northern [1], SOLiD [5]
Predicted targets


PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).