miRBase entry: rno-mir-106b

Stem-loop rno-mir-106b


Accession
MI0000889
Description
Rattus norvegicus rno-mir-106b precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
26 open access papers mention rno-mir-106b
(161 sentences)

Sequence

78254 reads, 112 reads per million, 492 experiments
ccugcugggacUAAAGUGCUGACAGUGCAGAUagugguccucucugugcuaCCGCACUGUGGGUACUUGCUGCuccagcagg
(((((((((.(..(((((((.(((((((.....(((((.(.....).))))).))))))).)))))))...).)))))))))

Structure
         a -UA       G       AGAUa     c u 
ccugcuggg c   AAGUGCU ACAGUGC     guggu c c
||||||||| |   ||||||| |||||||     ||||| | u
ggacgaccu G   UUCAUGG UGUCACG     Caucg g c
         C UCG       G       ----C     u u 


Annotation confidence High
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Genome context
chr12: 19307752-19307833 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-106b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-106b-5p

Accession MIMAT0000825
Description Rattus norvegicus rno-miR-106b-5p mature miRNA
Sequence 12 - UAAAGUGCUGACAGUGCAGAU - 32
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-106b-3p

Accession MIMAT0004727
Description Rattus norvegicus rno-miR-106b-3p mature miRNA
Sequence 52 - CCGCACUGUGGGUACUUGCUGC - 73
Evidence experimental
cloned [2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249