Stem-loop sequence rno-mir-103-2

Accession

MI0000887 (change log)

Description

Rattus norvegicus miR-103-2 stem-loop

Gene family

MIPF0000024; mir-103

Literature search

31 open access papers mention rno-mir-103-2
(125 sentences)

Stem-loop

   g    c  g      --   u  u           ----    ua 
5'  ucuu gu cuuuca  gcu cu uacagugcugc    cuug  g
    |||| || ||||||  ||| || |||||||||||    ||||  c
3'  agaa ca gaaagu  cgg ga auguuacgacg    ggac  a
   a    c  a      au   -  c           aacu    uu 

Deep sequencing

2031389 reads, 1.45e+03 reads per million, 509 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr3: 123833671-123833756 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000033554 ; Pank2-201; intron 5

Database links

• EntrezGene:Mir103-2
• miRBase Tracker:MI0000887

Mature sequence rno-miR-103-2-5p

• Accession: MIMAT0017113
• Previous IDs: rno-miR-103-2*
• Sequence: 15 - agcuucuuuacagugcu - 31
• Deep sequencing: 1449 reads, 281 experiments
• Evidence: experimental; SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-103-2-5p
  • miRDB:rno-miR-103-2-5p

Mature sequence rno-miR-103-3p

• Accession: MIMAT0000824
• Previous IDs: rno-miR-103
• Sequence: 52 - agcagcauuguacagggcuauga - 74
• Deep sequencing: 4059051 reads, 509 experiments
• Evidence: experimental; cloned [1-4], Northern [1,3], SOLiD [5]
• Predicted targets:
  • TargetScanVert:rno-miR-103-3p
  • miRDB:rno-miR-103-3p
  • microrna.org:rno-miR-103-3p

References

1. PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).