miRBase entry: rno-mir-34c

Stem-loop rno-mir-34c


Accession
MI0000876
Description
Rattus norvegicus rno-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
58 open access papers mention rno-mir-34c
(232 sentences)

Sequence

901529 reads, 4613 reads per million, 494 experiments
agucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaguaccAAUCACUAACCACACAGCCAGGuaaaaagacu
(((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))))

Structure
     ag     A   A    A     C      C  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
ucaga  aauGG CCG CACA CAAUC ACUAAc au a
     aa     A   A    C     -      c  g 


Annotation confidence High
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Genome context
chr8: 55492024-55492100 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-34c-5p

Accession MIMAT0000814
Description Rattus norvegicus rno-miR-34c-5p mature miRNA
Sequence 13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-34c-3p

Accession MIMAT0004723
Description Rattus norvegicus rno-miR-34c-3p mature miRNA
Sequence 46 - AAUCACUAACCACACAGCCAGG - 67
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249