Stem-loop sequence rno-mir-34c

AccessionMI0000876 (change log)
DescriptionRattus norvegicus miR-34c stem-loop
Gene family MIPF0000039; mir-34
Literature search

58 open access papers mention rno-mir-34c
(224 sentences)

Stem-loop 
        ag     a   a    a     c      c  a 
5' agucu  uuacu ggc gugu guuag ugauug ua u
   |||||  ||||| ||| |||| ||||| |||||| ||  
3' ucaga  aaugg ccg caca caauc acuaac au a
        aa     a   a    c     -      c  g
Get sequence
Deep sequencing
1054097 reads, 4.83e+03 reads per million, 494 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr8: 55492024-55492100 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-34c
rno-mir-34bchr8: 55492542-55492625 [-]
rno-mir-34cchr8: 55492024-55492100 [-]
Database links

Mature sequence rno-miR-34c-5p

Accession MIMAT0000814
Previous IDsrno-miR-34c
Sequence

13 -  

aggcaguguaguuagcugauugc

 - 35

Get sequence
Deep sequencing1048843 reads, 493 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

Mature sequence rno-miR-34c-3p

Accession MIMAT0004723
Previous IDsrno-miR-34c*
Sequence

46 -  

aaucacuaaccacacagccagg

 - 67

Get sequence
Deep sequencing5253 reads, 307 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).