Stem-loop sequence rno-mir-34b

Accession

MI0000875 (change log)

Description

Rattus norvegicus miR-34b stem-loop

Gene family

MIPF0000039; mir-34

Literature search

49 open access papers mention rno-mir-34b
(188 sentences)

Stem-loop

        cg    -gua       uaa    c       -   g 
5' gugcu  guuu    ggcagug   uuag ugauugu agu c
   |||||  ||||    |||||||   |||| ||||||| ||| g
3' cacgg  caaa    ccgucac   aauc acuaaca ucg g
        aa    acua       cuc    -       g   u 

Deep sequencing

922720 reads, 4.35e+03 reads per million, 494 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr8: 55492542-55492625 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-34b

• rno-mir-34b: chr8: 55492542-55492625 [-]
• rno-mir-34c: chr8: 55492024-55492100 [-]

Database links

• EntrezGene:Mir34b
• miRBase Tracker:MI0000875

Mature sequence rno-miR-34b-5p

• Accession: MIMAT0000813
• Previous IDs: rno-miR-34b
• Sequence: 14 - aggcaguguaauuagcugauugu - 36
• Deep sequencing: 912325 reads, 493 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-34b-5p
  • miRDB:rno-miR-34b-5p
  • microrna.org:rno-miR-34b-5p

Mature sequence rno-miR-34b-3p

• Accession: MIMAT0017105
• Previous IDs: rno-miR-34b*
• Sequence: 51 - aaucacuaacuccacugccauc - 72
• Deep sequencing: 10383 reads, 340 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-34b-3p
  • miRDB:rno-miR-34b-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).