Stem-loop rno-mir-34b

Accession

MI0000875

Description

Rattus norvegicus rno-mir-34b precursor miRNA

Gene family

MIPF0000039; mir-34

Literature search

49 open access papers mention rno-mir-34b
(195 sentences)

Sequence

38130 reads, 474 reads per million, 401 experiments

gugcucgguuuguAGGCAGUGUAAUUAGCUGAUUGUagugcggugcugacAAUCACUAACUCCACUGCCAUCaaaacaaggcac
(((((..((((...(((((((...((((.((((((((((.....))).)))))))))))...)))))))....))))..)))))

Structure

     cg    -guA       UAA    C       -   g 
gugcu  guuu    GGCAGUG   UUAG UGAUUGU agu c
|||||  ||||    |||||||   |||| ||||||| ||| g
cacgg  caaa    CCGUCAC   AAUC ACUAAca ucg g
     aa    aCUA       CUC    -       g   u 

Annotation confidence High

Genome context

chr8: 55492542-55492625 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-34b

Mature rno-miR-34b-5p

• Accession: MIMAT0000813
• Description: Rattus norvegicus rno-miR-34b-5p mature miRNA
• Sequence: 14 - AGGCAGUGUAAUUAGCUGAUUGU - 36
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-34b-3p

• Accession: MIMAT0017105
• Description: Rattus norvegicus rno-miR-34b-3p mature miRNA
• Sequence: 51 - AAUCACUAACUCCACUGCCAUC - 72
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249