miRBase entry: rno-mir-30e

Stem-loop rno-mir-30e


Accession
MI0000867
Description
Rattus norvegicus rno-mir-30e precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
59 open access papers mention rno-mir-30e
(268 sentences)

Sequence

9811048 reads, 10150 reads per million, 515 experiments
gggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGcuguaagguguugagaggagCUUUCAGUCGGAUGUUUACAGCggcaggcugcca
.((((((((..(((.((((((((((((..(((((((((((................))))))))))))))))))))))).))))))))))).

Structure
g        uu   a            UU           guaaggu 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGcu       g
 ||||||||  ||| ||||||||||||  |||||||||||        
 ccgucgga  cgg GACAUUUGUAGG  CUGACUUUCga       u
a        --   C            --           ggagagu 


Annotation confidence High
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
chr5: 139702872-139702963 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-30e-5p

Accession MIMAT0000805
Description Rattus norvegicus rno-miR-30e-5p mature miRNA
Sequence 17 - UGUAAACAUCCUUGACUGGAAG - 38
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-30e-3p

Accession MIMAT0004720
Description Rattus norvegicus rno-miR-30e-3p mature miRNA
Sequence 59 - CUUUCAGUCGGAUGUUUACAGC - 80
Evidence experimental
cloned [2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249