Stem-loop rno-mir-28

Accession

MI0000861

Description

Rattus norvegicus rno-mir-28 precursor miRNA

Gene family

MIPF0000057; mir-28

Literature search

13 open access papers mention rno-mir-28
(17 sentences)

Sequence

733084 reads, 717 reads per million, 504 experiments

ggucccuacccgcAAGGAGCUCACAGUCUAUUGAGuuccuuuucugauucuccCACUAGAUUGUGAGCUCCUGGAgggcaggcacu
(((.(((.(((...((((((((((((((((..(((...(......)...)))....))))))))))))))))...))).))).)))

Structure

   c   a   gcA                --UU   uuc uu 
ggu ccu ccc   AGGAGCUCACAGUCUA    GAG   c  u
||| ||| |||   ||||||||||||||||    |||   |   
uca gga ggg   UCCUCGAGUGUUAGAU    cuc   g  u
   c   c   AGG                CACc   uua uc 

Annotation confidence High

Genome context

chr11: 79380523-79380608 [-]

Mature rno-miR-28-5p

• Accession: MIMAT0000800
• Description: Rattus norvegicus rno-miR-28-5p mature miRNA
• Sequence: 14 - AAGGAGCUCACAGUCUAUUGAG - 35
• Evidence: experimental ; cloned [1-3], SOLiD [4]

Mature rno-miR-28-3p

• Accession: MIMAT0004716
• Description: Rattus norvegicus rno-miR-28-3p mature miRNA
• Sequence: 54 - CACUAGAUUGUGAGCUCCUGGA - 75
• Evidence: experimental ; cloned [3], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68