miRBase entry: rno-mir-25

Stem-loop rno-mir-25


Accession
MI0000856
Description
Rattus norvegicus rno-mir-25 precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
25 open access papers mention rno-mir-25
(184 sentences)

Sequence

1123324 reads, 1074 reads per million, 502 experiments
ggccaguguugagAGGCGGAGACACGGGCAAUUGCuggacgcugcccugggCAUUGCACUUGUCUCGGUCUGAcagugccggcc
((((.((((((..((((.((((((.(((((((..((((........))))..))))).)))))))).))))..)))))).))))

Structure
    a      ag    G      C  -     UG    acg 
ggcc guguug  AGGC GAGACA GG GCAAU  Cugg   c
|||| ||||||  |||| |||||| || |||||  ||||    
ccgg cgugac  UCUG CUCUGU UC CGUUA  gguc   u
    c      AG    G      -  A     Cg    ccg 


Annotation confidence High
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Genome context
chr12: 19307340-19307423 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-25
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-25-5p

Accession MIMAT0004713
Description Rattus norvegicus rno-miR-25-5p mature miRNA
Sequence 14 - AGGCGGAGACACGGGCAAUUGC - 35
Evidence experimental
cloned [2], SOLiD [3]

Mature rno-miR-25-3p

Accession MIMAT0000795
Description Rattus norvegicus rno-miR-25-3p mature miRNA
Sequence 52 - CAUUGCACUUGUCUCGGUCUGA - 73
Evidence experimental
cloned [1-2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249