miRBase entry: rno-mir-19b-2

Stem-loop rno-mir-19b-2


Accession
MI0000848
Description
Rattus norvegicus rno-mir-19b-2 precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
42 open access papers mention rno-mir-19b-2
(176 sentences)

Sequence

121787 reads, 177 reads per million, 496 experiments
acauugcuacuuacgguuAGUUUUGCAGAUUUGCAGUUCAGcguauauguggauauauggcUGUGCAAAUCCAUGCAAAACUGAuugugaugaugu
((((((....(((((((((((((((((((((((((...((((((((((....)))))).))))))))))))..)))))))))))))))))))))))

Structure
      cuac                 --        GUU    -      g 
acauug    uuacgguuAGUUUUGCA  GAUUUGCA   CAGc guauau u
||||||    |||||||||||||||||  ||||||||   |||| ||||||  
uguagu    aguguuAGUCAAAACGU  CUAAACGU   GUcg uauaua g
      ----                 AC        ---    g      g 


Annotation confidence Not enough data
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Genome context
chrX: 140117379-140117474 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from rno-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-19b-3p

Accession MIMAT0000788
Description Rattus norvegicus rno-miR-19b-3p mature miRNA
Sequence 62 - UGUGCAAAUCCAUGCAAAACUGA - 84
Evidence experimental
cloned [1-3], SOLiD [4]

Mature rno-miR-19b-2-5p

Accession MIMAT0017097
Description Rattus norvegicus rno-miR-19b-2-5p mature miRNA
Sequence 19 - AGUUUUGCAGAUUUGCAGUUCAG - 41
Evidence experimental
SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  4. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249