miRBase entry: rno-mir-19b-1

Stem-loop rno-mir-19b-1


Accession
MI0000847
Description
Rattus norvegicus rno-mir-19b-1 precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
45 open access papers mention rno-mir-19b-1
(169 sentences)

Sequence

121496 reads, 189 reads per million, 496 experiments
cacuggucuaugguuAGUUUUGCAGGUUUGCAUCCAGcuguauaauauucugcUGUGCAAAUCCAUGCAAAACUGAcugugguggug
((((...(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))).))))

Structure
    ggu                 -  -      UC    uguau 
cacu   cuaugguuAGUUUUGCA GG UUUGCA  CAGc     a
||||   ||||||||||||||||| || ||||||  ||||     a
gugg   ggugucAGUCAAAACGU CC AAACGU  GUcg     u
    --u                 A  U      --    ucuua 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr15: 100180464-100180550 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from rno-mir-19b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-19b-1-5p

Accession MIMAT0017096
Description Rattus norvegicus rno-miR-19b-1-5p mature miRNA
Sequence 16 - AGUUUUGCAGGUUUGCAUCCAG - 37
Evidence experimental
SOLiD [4]

Mature rno-miR-19b-3p

Accession MIMAT0000788
Description Rattus norvegicus rno-miR-19b-3p mature miRNA
Sequence 54 - UGUGCAAAUCCAUGCAAAACUGA - 76
Evidence experimental
cloned [1-3], SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  4. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249