Stem-loop sequence rno-mir-18a

AccessionMI0000846 (change log)
Previous IDsrno-mir-18
DescriptionRattus norvegicus miR-18a stem-loop
Gene family MIPF0000001; mir-17
Literature search

32 open access papers mention rno-mir-18a
(83 sentences)

   u     -        u   --   u   uc   u    a   -  -a  u 
5'  gcgug cuuuuugu cua  agg gca  uag gcag uag ug  ag a
    ||||| |||||||| |||  ||| |||  ||| |||| ||| ||  ||  
3'  uguau gaagaaua ggu  ucc cgu  auc cguc auc ac  uc g
   c     u        c   cu   u   ga   c    -   u  ga  a 
Get sequence
Deep sequencing
12257 reads, 4 reads per million, 475 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

This miRNA was predicted based on homology to a verified miRNA from mouse [1]. Its expression in rat was later verified by cloning [2]. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr15: 100180015-100180110 [+]
Clustered miRNAs
< 10kb from rno-mir-18a
rno-mir-17-1chr15: 100179879-100179962 [+]
rno-mir-18achr15: 100180015-100180110 [+]
rno-mir-19achr15: 100180162-100180243 [+]
rno-mir-20achr15: 100180334-100180418 [+]
rno-mir-19b-1chr15: 100180464-100180550 [+]
rno-mir-92a-1chr15: 100180586-100180663 [+]
Database links

Mature sequence rno-miR-18a-5p

Accession MIMAT0000787
Previous IDsrno-miR-18;rno-miR-18a

17 - 


 - 39

Get sequence
Deep sequencing9670 reads, 471 experiments
Evidence experimental; cloned [2-3], SOLiD [4]
Predicted targets

Mature sequence rno-miR-18a-3p

Accession MIMAT0017095
Previous IDsrno-miR-18a*

58 - 


 - 78

Get sequence
Deep sequencing2575 reads, 360 experiments
Evidence experimental; SOLiD [4]
Predicted targets


PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).