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miRBase |
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Stem-loop sequence rno-mir-16 |
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Accession | MI0000844 (change log) | |||||
Description | Rattus norvegicus miR-16 stem-loop | |||||
Gene family | MIPF0000006; mir-15 | |||||
Literature search |
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67 open access papers mention rno-mir-16 | |||||
Stem-loop |
caua uc cu ua c ag aau 5' cuugu cgcu agcagcacg aauauugg gu uga a ||||| |||| ||||||||| |||||||| || ||| 3' ggaca guga ucgucgugu uuauaacc ca auu a auag gu uu ua a -a aua |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence rno-miR-16-5p |
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Accession | MIMAT0000785 |
Previous IDs | rno-miR-16 |
Sequence |
17 - uagcagcacguaaauauuggcg - 38 |
Deep sequencing | 6840273 reads, 513 experiments |
Evidence | experimental; cloned [1-4], Northern [1,3], SOLiD [5] |
Predicted targets |
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Mature sequence rno-miR-16-3p |
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Accession | MIMAT0017094 |
Previous IDs | rno-miR-16* |
Sequence |
59 - accaauauuauugugcugcuu - 79 |
Deep sequencing | 1416 reads, 358 experiments |
Evidence | experimental; SOLiD [5] |
Predicted targets |
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References |
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1 |
PMID:14691248
"Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
Proc Natl Acad Sci U S A. 101:360-365(2004).
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2 |
PMID:15345052
"Microarray analysis of microRNA expression in the developing mammalian brain"
Genome Biol. 5:R68(2004).
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3 | |
4 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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5 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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