Stem-loop cel-lsy-6

Accession

MI0000801

Description

Caenorhabditis elegans cel-lsy-6 precursor miRNA

Gene family

MIPF0000265; lsy-6

Literature search

16 open access papers mention cel-lsy-6
(105 sentences)

Sequence

434 reads, 14 reads per million, 16 experiments

ccaucAAAUGCGUCUAGUAUCAAAAUcauguaaaaacuguaaaacagaUUUUGUAUGAGACGCAUUUCGAuga
.((((((((((((((.(((.(((((((.(((............))))))))))))).)))))))))).)))).

Structure

c    -          A   U       a   aaaaa 
 cauc AAAUGCGUCU GUA CAAAAUc ugu     c
 |||| |||||||||| ||| ||||||| |||      
 guAG UUUACGCAGA UAU GUUUUag aca     u
a    C          G   -       -   aaaug 

Annotation confidence Not enough data

Genome context

chrV: 10647232-10647304 [+]

Mature cel-lsy-6-3p

• Accession: MIMAT0000749
• Description: Caenorhabditis elegans cel-lsy-6-3p mature miRNA
• Sequence: 49 - UUUUGUAUGAGACGCAUUUCGA - 70
• Evidence: experimental ; cloned [2], PCR [2], Illumina [3-4]

Mature cel-lsy-6-5p

• Accession: MIMAT0031896
• Description: Caenorhabditis elegans cel-lsy-6-5p mature miRNA
• Sequence: 6 - AAAUGCGUCUAGUAUCAAAAU - 26
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 15317971
   Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
   "Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
   "RNA (2004) 10:1309-1322


3. PubMed ID: 14685240
   A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans
   "Johnston RJ, Hobert O"
   "Nature (2003) 426:845-849


4. PubMed ID: 21085120
   Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
   "Jan CH, Friedman RC, Ruby JG, Bartel DP"
   "Nature (2011) 469:97-101