Stem-loop sequence mmu-mir-383

Accession

MI0000800 (change log)

Symbol

MGI:Mir383

Description

Mus musculus miR-383 stem-loop

Gene family

MIPF0000137; mir-383

Literature search

15 open access papers mention mmu-mir-383
(181 sentences)

Stem-loop

   ----cuca      aa    a        uug   gga 
5'         gaucag  ggug cuguggcu   ggu   u
           ||||||  |||| ||||||||   |||    
3'         cugguc  ucac gacaccga   cua   a
   gagaaaga      cg    -        ---   auu 

Deep sequencing

201823 reads, 194 reads per million, 63 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr8: 38252133-38252202 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000078438 ; Sgcz-002; intron 1

  OTTMUST00000078418 ; Sgcz-001; intron 1

  ENSMUST00000135764 ; Sgcz-002; intron 1

  ENSMUST00000118896 ; Sgcz-001; intron 1

  ENSMUST00000083523 ; Mir383-201; exon 1

Database links

• EntrezGene:Mirn383
• MGI:Mir383
• RNAcentral:URS000075DBFD_10090
• miRBase Tracker:MI0000800

Mature sequence mmu-miR-383-5p

• Accession: MIMAT0000748
• Previous IDs: mmu-miR-383
• Sequence: 4 - agaucagaaggugacuguggcu - 25
• Deep sequencing: 201659 reads, 63 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00004CEC5C_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-383-5p.1
  • miRDB:mmu-miR-383-5p
  • microrna.org:mmu-miR-383-5p

Mature sequence mmu-miR-383-3p

• Accession: MIMAT0017082
• Previous IDs: mmu-miR-383*
• Sequence: 45 - ccacagcacugccuggucaga - 65
• Deep sequencing: 159 reads, 14 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS0000406128_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-383-3p
  • miRDB:mmu-miR-383-3p

References

1. PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).