Stem-loop sequence mmu-mir-138-1

AccessionMI0000722 (change log)
Symbol MGI:Mir138-1
DescriptionMus musculus miR-138-1 stem-loop
Gene family MIPF0000075; mir-138
Literature search

94 open access papers mention mmu-mir-138-1
(728 sentences)

   cucua   ug    u   -  a ag             uca       gc a 
5'      gca  gugu gug gg c  cugguguugugaa   ggccguu  c a
        |||  |||| ||| || |  |||||||||||||   |||||||  | u
3'      cgu  cacg cac cc g  gaccacaacacuu   ucggcaa  g c
   --gaa   --    u   a  - -g             -ca       ga a 
Get sequence
Deep sequencing
495183 reads, 775 reads per million, 103 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

Mouse miR-138 was cloned from mouse brain tissue in [1]. There are 2 predicted hairpin precursor structures in the mouse genome, each has a closely related human homologue [2]. mir-138-1 (MI0000722) is found on mouse chromosome 8, and mir-138-2 (MI0000164, previously named mir-138 here) on chromosome 9. Kim et al. and Obernosterer et al. independently show that the mature product is a 23mer [3,4].

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr9: 122682876-122682974 [+]
Database links

Mature sequence mmu-miR-138-5p

Accession MIMAT0000150
Previous IDsmmu-miR-138

23 - 


 - 45

Get sequence
Deep sequencing980725 reads, 103 experiments
Evidence experimental; cloned [1,5], Illumina [6-7]
Database links
Predicted targets

Mature sequence mmu-miR-138-1-3p

Accession MIMAT0004668
Previous IDsmmu-miR-138*;mmu-miR-138-1*

61 - 


 - 82

Get sequence
Deep sequencing4027 reads, 52 experiments
Evidence experimental; cloned [5], Illumina [6-7]
Database links
Predicted targets


PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
PMID:16738409 "Post-transcriptional regulation of microRNA expression" Obernosterer G, Leuschner PJ, Alenius M, Martinez J RNA. 12:1161-1167(2006).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).