miRBase entry: mmu-mir-135a-2

Stem-loop mmu-mir-135a-2


Accession
MI0000715
Symbol
MGI: Mir135a-2
Description
Mus musculus mmu-mir-135a-2 precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
74 open access papers mention mmu-mir-135a-2
(507 sentences)

Sequence

102469 reads, 1765 reads per million, 74 experiments
agauaaauucacucuagugcuuUAUGGCUUUUUAUUCCUAUGUGAucguaauaaagucucaUGUAGGGAUGGAAGCCAUGAAauacauugugaaaauuca
.((....(((((....(((.((((((((((((.((((((((((((.(........)..)))))))))))))))))))))))).)))...)))))...)).

Structure
a  uaaa     ucua   c            U            -u gua 
 ga    uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA  c   a
 ||    |||||    ||| |||||||||||| ||||||||||||  |    
 cu    aagug    cau AAGUACCGAAGG UAGGGAUGUacu  g   u
a  -uaa     -uua   a            -            cu aaa 


Annotation confidence High
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Genome context
chr10: 92072086-92072185 [-]

Database links

Mature mmu-miR-135a-5p

Accession MIMAT0000147
Description Mus musculus mmu-miR-135a-5p mature miRNA
Sequence 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
Evidence experimental
cloned [1,3], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-135a-2-3p

Accession MIMAT0017064
Description Mus musculus mmu-miR-135a-2-3p mature miRNA
Sequence 62 - UGUAGGGAUGGAAGCCAUGAA - 82
Evidence experimental
Illumina [5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  5. PubMed ID: 15634332
    New human and mouse microRNA genes found by homology search
    "Weber MJ"
    "FEBS J (2005) 272:59-73