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miRBase |
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Stem-loop sequence mmu-mir-28a |
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Accession | MI0000690 (change log) | ||||
Previous IDs | mmu-mir-28 | ||||
Symbol | MGI:Mir28a | ||||
Description | Mus musculus miR-28 stem-loop | ||||
Gene family | MIPF0000057; mir-28 | ||||
Literature search |
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22 open access papers mention mmu-mir-28a | ||||
Stem-loop |
c a a g ----uu gcc 5' ggu ccu ccuuc ag agcucacagucua gaguu u ||| ||| ||||| || ||||||||||||| ||||| 3' uca gga gggag uc ucgaguguuagau cuuag u c c g g cacccu ucu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
Mouse mir-28 is predicted [2] based on homology to a cloned miR from human (MI0000086) [1]. Its expression was later verified by cloning [3]. |
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Genome context |
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Database links |
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Mature sequence mmu-miR-28a-5p |
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Accession | MIMAT0000653 |
Previous IDs | mmu-miR-28;mmu-miR-28-5p |
Sequence |
14 - aaggagcucacagucuauugag - 35 |
Deep sequencing | 197001 reads, 107 experiments |
Evidence | experimental; cloned [3], Illumina [4-5] |
Database links |
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Predicted targets |
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Mature sequence mmu-miR-28a-3p |
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Accession | MIMAT0004661 |
Previous IDs | mmu-miR-28*;mmu-miR-28-3p |
Sequence |
54 - cacuagauugugagcugcugga - 75 |
Deep sequencing | 108687 reads, 106 experiments |
Evidence | experimental; cloned [3], Illumina [4-5] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:11679670
"Identification of novel genes coding for small expressed RNAs"
Science. 294:853-858(2001).
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2 |
PMID:15634332
"New human and mouse microRNA genes found by homology search"
FEBS J. 272:59-73(2005).
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3 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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4 |
PMID:20215419
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
Mol Hum Reprod. 16:463-471(2010).
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5 |
PMID:20413612
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
Genes Dev. 24:992-1009(2010).
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