Stem-loop sequence osa-MIR169a

Accession

MI0000679 (change log)

Previous IDs

osa-MIR169

Description

Oryza sativa miR169a stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

65 open access papers mention osa-MIR169a
(393 sentences)

Stem-loop

       ---   -     g    u    u   a     u    c         ug          c   c   cu       --a       
5' cgcc   ggc ggccu acau ggga cgg ggcca ggug agccaagga  acuugccgau gau gau  aucuaug   agcuaa 
   ||||   ||| ||||| |||| |||| ||| ||||| |||| |||||||||  |||||||||| ||| |||  |||||||   ||||| g
3' gcgg   ccg ccgga ugua uccu guc ccggu cuac ucgguucuu  ugaacgguua cua cua  uagguac   ucgauc 
       ugu   g     a    c    c   c     u    a         gu          a   c   cc       cgg       

Deep sequencing

6732 reads, 4.1e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

• Coordinates (MSU7): Chr1: 8729104-8729276 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000679

Mature sequence osa-miR169a

• Accession: MIMAT0000644
• Sequence: 38 - cagccaaggaugacuugccga - 58
• Deep sequencing: 6152 reads, 2 experiments
• Evidence: by similarity; MI0000212
• Database links:
  • RNAcentral:URS000052B358_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).