Stem-loop sequence osa-MIR156j

Accession

MI0000662 (change log)

Description

Oryza sativa miR156j stem-loop

Gene family

MIPF0000008; MIR156

Literature search

119 open access papers mention osa-MIR156j
(648 sentences)

Stem-loop

             ----      uc   cau    aaggc     u          -   -         a     c  c   u  c    g 
5' uuggggcggg    gcggga  gag   auga     gagau guugacagaa gag agugagcac cggcg gg ggc ag cauc g
   ||||||||||    ||||||  |||   ||||     ||||| |||||||||| ||| ||||||||| ||||| || ||| || |||| c
3' agccccgccc    cgcccu  cuc   uacu     cucua cgacugucuu cuc ucgcucgug gccgc cc ccg uc guag g
             ccua      cc   -ac    -----     -          u   c         c     -  -   -  c    g 

Deep sequencing

568836 reads, 3.91e+05 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr6: 26554795-26554959 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000662

Mature sequence osa-miR156j-5p

• Accession: MIMAT0000627
• Previous IDs: osa-miR156j
• Sequence: 42 - ugacagaagagagugagcac - 61
• Deep sequencing: 568715 reads, 2 experiments
• Evidence: by similarity; MI0000179
• Database links:
  • RNAcentral:URS000020F5A7_39947

Mature sequence osa-miR156j-3p

• Accession: MIMAT0022850
• Sequence: 108 - gcucgcuccucuuucugucagc - 129
• Deep sequencing: 118 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000570BF8_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).