Stem-loop sequence osa-MIR156i

Accession

MI0000661 (change log)

Description

Oryza sativa miR156i stem-loop

Gene family

MIPF0000008; MIR156

Literature search

119 open access papers mention osa-MIR156i
(649 sentences)

Stem-loop

            -    -         a      g cgga       cgg 
5' ggugacaga agag agugagcac cggccg g    acggcac   c
   ||||||||| |||| ||||||||| |||||| |    |||||||    
3' cuacugucu ucuc ucacucgug gccggc c    ugccgug   g
            g    g         c      g ----       uag 

Deep sequencing

560097 reads, 3.86e+05 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

• Coordinates (MSU7): Chr2: 24119995-24120084 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000661

Mature sequence osa-miR156i

• Accession: MIMAT0000626
• Sequence: 3 - ugacagaagagagugagcac - 22
• Deep sequencing: 560064 reads, 2 experiments
• Evidence: by similarity; MI0000178
• Database links:
  • RNAcentral:URS000020F5A7_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).