Stem-loop sequence osa-MIR156g

Accession

MI0000659 (change log)

Description

Oryza sativa miR156g stem-loop

Gene family

MIPF0000008; MIR156

Literature search

120 open access papers mention osa-MIR156g
(674 sentences)

Stem-loop

             -     -        a      gcagacugcaucugaauuaccuguug 
5' ggcugacaga agaga gugagcac cagcgg                          c
   |||||||||| ||||| |||||||| ||||||                           
3' ucgacugucu ucucu cacucgug guugcc                          g
             c     u        c      guucgacgcaggcagcagaagaagca 

Deep sequencing

560186 reads, 3.86e+05 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr9: 15065253-15065368 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000659

Mature sequence osa-miR156g-5p

• Accession: MIMAT0000624
• Previous IDs: osa-miR156g
• Sequence: 4 - ugacagaagagagugagcac - 23
• Deep sequencing: 560126 reads, 2 experiments
• Evidence: by similarity; MI0000178
• Database links:
  • RNAcentral:URS000020F5A7_39947

Mature sequence osa-miR156g-3p

• Accession: MIMAT0022848
• Sequence: 94 - gcucacuucucucucugucagc - 115
• Deep sequencing: 51 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000000CCDD_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).