Stem-loop sequence osa-MIR156e

Accession

MI0000657 (change log)

Description

Oryza sativa miR156e stem-loop

Gene family

MIPF0000008; MIR156

Literature search

119 open access papers mention osa-MIR156e
(650 sentences)

Stem-loop

        ga          -   -         a     gggc          - g 
5' ggcgc  ggugacagaa gag agugagcac cggcc    gugacggcac c g
   |||||  |||||||||| ||| ||||||||| |||||    |||||||||| | c
3' ccgug  cuacugucuu cuc ucacucgug gccgg    cgcugccgug g g
        gc          u   g         c     ----          c g 

Deep sequencing

560168 reads, 3.86e+05 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

• Coordinates (MSU7): Chr4: 25026327-25026430 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000657

Mature sequence osa-miR156e

• Accession: MIMAT0000622
• Sequence: 10 - ugacagaagagagugagcac - 29
• Deep sequencing: 560065 reads, 2 experiments
• Evidence: by similarity; MI0000178
• Database links:
  • RNAcentral:URS000020F5A7_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).