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miRBase |
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Stem-loop sequence rno-mir-151 |
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Accession | MI0000647 (change log) | |||||
Description | Rattus norvegicus miR-151 stem-loop | |||||
Gene family | MIPF0000057; mir-28 | |||||
Literature search |
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11 open access papers mention rno-mir-151 | |||||
Stem-loop |
--------------a cu c ca u uc 5' gcg uuccug ccucgaggagcu cagucuagua g u ||| |||||| |||||||||||| |||||||||| | c 3' ugc agggac ggaguuccucgg gucagaucau c c gcccuccacucauac -u a -a c cu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1]. Landgraf et al show that the 5' product is the predominant one [3]. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence rno-miR-151-5p |
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Accession | MIMAT0000613 |
Previous IDs | rno-miR-151*;rno-miR-151 |
Sequence |
16 - ucgaggagcucacagucuagu - 36 |
Deep sequencing | 1115110 reads, 502 experiments |
Evidence | experimental; cloned [1-3], SOLiD [4] |
Predicted targets |
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Mature sequence rno-miR-151-3p |
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Accession | MIMAT0000614 |
Previous IDs | rno-miR-151;rno-miR-151* |
Sequence |
51 - cuagacugaggcuccuugagg - 71 |
Deep sequencing | 2229427 reads, 506 experiments |
Evidence | experimental; cloned [3], SOLiD [4] |
Predicted targets |
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References |
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1 |
PMID:14691248
"Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
Proc Natl Acad Sci U S A. 101:360-365(2004).
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3 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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4 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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