Stem-loop sequence rno-mir-352

Accession

MI0000644 (change log)

Description

Rattus norvegicus miR-352 stem-loop

Literature search

7 open access papers mention rno-mir-352
(83 sentences)

Stem-loop

   ------------------------------guacauauguugaag       aua     agu 
5'                                              auuauua   uauag   g
                                                |||||||   |||||    
3'                                              ugauggu   guguu   g
   aguaugugauguagcaugauacguuggaugaugagauguauagua       --g     gug 

Deep sequencing

1145 reads, 0 reads per million, 283 experiments

Confidence

Annotation confidence: not enough data

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Comments

Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1]. miR-352 is closely related to let-7d (a single deletion), but the predicted hairpin precursor sequences are unrelated, and express their mature forms from opposite strands.

Database links

• EntrezGene:Mir352
• miRBase Tracker:MI0000644

Mature sequence rno-miR-352

• Accession: MIMAT0000610
• Sequence: 61 - agaguaguagguugcauagua - 81
• Deep sequencing: 1144 reads, 298 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:rno-miR-352
  • miRDB:rno-miR-352
  • microrna.org:rno-miR-352

References

1. PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).