Stem-loop sequence rno-mir-342

AccessionMI0000626 (change log)
DescriptionRattus norvegicus miR-342 stem-loop
Gene family MIPF0000190; mir-342
Literature search

15 open access papers mention rno-mir-342
(33 sentences)

   gaaaau    u        g      --ua      auuga      ugg  a 
5'       gggc caagguga gggugc    ucugug     gggaca   uc a
         |||| |||||||| ||||||    ||||||     ||||||   ||  
3'       uccg guuccacu cccacg    agacac     cucugu   ag u
   -agucg    -        g      cuaa      ----a      -ua  g 
Get sequence
Deep sequencing
88232 reads, 29.3 reads per million, 492 experiments
Confidence Annotation confidence: high
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The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [4]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr6: 132561169-132561267 [+]
ENSRNOT00000019583 ; Evl-201; intron 2
Database links

Mature sequence rno-miR-342-5p

Accession MIMAT0004652

19 - 


 - 40

Get sequence
Deep sequencing4495 reads, 403 experiments
Evidence experimental; cloned [4], SOLiD [5]
Predicted targets

Mature sequence rno-miR-342-3p

Accession MIMAT0000589
Previous IDsrno-miR-342

61 - 


 - 83

Get sequence
Deep sequencing83558 reads, 492 experiments
Evidence experimental; cloned [1-4], Northern [1], SOLiD [5]
Predicted targets


PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).