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miRBase |
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Stem-loop sequence rno-mir-342 |
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Accession | MI0000626 (change log) | ||||
Description | Rattus norvegicus miR-342 stem-loop | ||||
Gene family | MIPF0000190; mir-342 | ||||
Literature search |
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15 open access papers mention rno-mir-342 | ||||
Stem-loop |
gaaaau u g --ua auuga ugg a 5' gggc caagguga gggugc ucugug gggaca uc a |||| |||||||| |||||| |||||| |||||| || 3' uccg guuccacu cccacg agacac cucugu ag u -agucg - g cuaa ----a -ua g |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [4]. The ends of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Database links |
Mature sequence rno-miR-342-5p |
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Accession | MIMAT0004652 |
Sequence |
19 - aggggugcuaucugugauugag - 40 |
Deep sequencing | 4495 reads, 403 experiments |
Evidence | experimental; cloned [4], SOLiD [5] |
Predicted targets |
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Mature sequence rno-miR-342-3p |
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Accession | MIMAT0000589 |
Previous IDs | rno-miR-342 |
Sequence |
61 - ucucacacagaaaucgcacccgu - 83 |
Deep sequencing | 83558 reads, 492 experiments |
Evidence | experimental; cloned [1-4], Northern [1], SOLiD [5] |
Predicted targets |
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References |
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1 |
PMID:14691248
"Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
Proc Natl Acad Sci U S A. 101:360-365(2004).
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2 |
PMID:15345052
"Microarray analysis of microRNA expression in the developing mammalian brain"
Genome Biol. 5:R68(2004).
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3 | |
4 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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5 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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