Stem-loop sequence mmu-mir-338

Accession

MI0000619 (change log)

Symbol

MGI:Mir338

Description

Mus musculus miR-338 stem-loop

Gene family

MIPF0000097; mir-338

Literature search

33 open access papers mention mmu-mir-338
(271 sentences)

Stem-loop

   caacgcugcaca   c      cc      u   -         -   g g g 
5'             ggc guccuc  caacaa auc cuggugcug agu g u c
               ||| ||||||  |||||| ||| ||||||||| ||| | |  
3'             ucg cgggag  guuguu uag gacuacgac uca u a a
   --------accg   a      aa      u   u         c   g g c 

Deep sequencing

92734 reads, 145 reads per million, 78 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 120014765-120014862 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000009044 ; Aatk-008; intron 3

  OTTMUST00000009043 ; Aatk-007; intron 4

  OTTMUST00000009037 ; Aatk-001; intron 7

  OTTMUST00000009038 ; Aatk-002; intron 7

  OTTMUST00000009039 ; Aatk-003; intron 7

  OTTMUST00000009040 ; Aatk-004; intron 7

  ENSMUST00000136386 ; Aatk-008; intron 3

  ENSMUST00000132575 ; Aatk-007; intron 4

  ENSMUST00000064307 ; Aatk-002; intron 7

  ENSMUST00000150730 ; Aatk-004; intron 7

  ENSMUST00000103020 ; Aatk-001; intron 7

  ENSMUST00000103019 ; Aatk-003; intron 7

Clustered miRNAs

< 10kb from mmu-mir-338

• mmu-mir-3065: chr11: 120014767-120014853 [+]
• mmu-mir-338: chr11: 120014765-120014862 [-]

Database links

• EntrezGene:Mirn338
• MGI:Mir338
• RNAcentral:URS000075C8F2_10090
• miRBase Tracker:MI0000619

Mature sequence mmu-miR-338-5p

• Accession: MIMAT0004647
• Sequence: 26 - aacaauauccuggugcugagug - 47
• Deep sequencing: 51427 reads, 67 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00003776C9_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-338-5p
  • miRDB:mmu-miR-338-5p
  • microrna.org:mmu-miR-338-5p

Mature sequence mmu-miR-338-3p

• Accession: MIMAT0000582
• Previous IDs: mmu-miR-338
• Sequence: 61 - uccagcaucagugauuuuguug - 82
• Deep sequencing: 41301 reads, 76 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00000254A6_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-338-3p
  • miRDB:mmu-miR-338-3p
  • microrna.org:mmu-miR-338-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).