miRBase entry: rno-mir-148b

Stem-loop rno-mir-148b


Accession
MI0000616
Description
Rattus norvegicus rno-mir-148b precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
19 open access papers mention rno-mir-148b
(112 sentences)

Sequence

97146 reads, 2002 reads per million, 497 experiments
caggcacucuuagcauuugagguGAAGUUCUGUUAUACACUCAGGcuguggcucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcuuucua
...........(((.((((((((((((((((((.((.(((((((((....)).))))......))).)).)))))))))))))))))).))).....

Structure
caggcacucuu   a                  U  A   ------    -  u 
           agc uuugagguGAAGUUCUGU AU CAC      UCAG Gc g
           ||| |||||||||||||||||| || |||      |||| ||  
           ucg aagcucUGUUUCAAGACA UA GUG      aguc cg u
------aucuu   a                  C  C   ACUgaa    u  g 


Annotation confidence High
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Genome context
chr7: 144912038-144912134 [+]

Database links

Mature rno-miR-148b-5p

Accession MIMAT0004645
Description Rattus norvegicus rno-miR-148b-5p mature miRNA
Sequence 24 - GAAGUUCUGUUAUACACUCAGG - 45
Evidence experimental
cloned [2], SOLiD [3]

Mature rno-miR-148b-3p

Accession MIMAT0000579
Description Rattus norvegicus rno-miR-148b-3p mature miRNA
Sequence 61 - UCAGUGCAUCACAGAACUUUGU - 82
Evidence experimental
cloned [1], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249