Stem-loop sequence rno-mir-148b

Accession

MI0000616 (change log)

Description

Rattus norvegicus miR-148b stem-loop

Gene family

MIPF0000056; mir-148

Literature search

19 open access papers mention rno-mir-148b
(111 sentences)

Stem-loop

   caggcacucuu   a       ug         u  a   ------    -  u 
5'            agc uuugagg  aaguucugu au cac      ucag gc g
              ||| |||||||  ||||||||| || |||      |||| ||  
3'            ucg aagcucu  uucaagaca ua gug      aguc cg u
   ------aucuu   a       gu         c  c   acugaa    u  g 

Deep sequencing

498628 reads, 350 reads per million, 503 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr7: 144912038-144912134 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000065270 ; Copz1-201; intron 1

Database links

• EntrezGene:Mir148b
• miRBase Tracker:MI0000616

Mature sequence rno-miR-148b-5p

• Accession: MIMAT0004645
• Sequence: 24 - gaaguucuguuauacacucagg - 45
• Deep sequencing: 20875 reads, 488 experiments
• Evidence: experimental; cloned [2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-148b-5p
  • miRDB:rno-miR-148b-5p
  • microrna.org:rno-miR-148b-5p

Mature sequence rno-miR-148b-3p

• Accession: MIMAT0000579
• Previous IDs: rno-miR-148b
• Sequence: 61 - ucagugcaucacagaacuuugu - 82
• Deep sequencing: 477742 reads, 501 experiments
• Evidence: experimental; cloned [1], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-148b-3p
  • miRDB:rno-miR-148b-3p
  • microrna.org:rno-miR-148b-3p

References

1. PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).