Stem-loop sequence rno-mir-337

Accession

MI0000614 (change log)

Description

Rattus norvegicus miR-337 stem-loop

Gene family

MIPF0000195; mir-337

Literature search

5 open access papers mention rno-mir-337
(5 sentences)

Stem-loop

   aguguagugagaa uu         -   c         c         u  ca 
5'              g  ggggggugg gaa ggcgucaug aggaguuga ug  c
                |  ||||||||| ||| ||||||||| ||||||||| ||   
3'              c  ucccccacu cuu ccguaguau uccucgacu ac  a
   -----------aa -u         u   u         a         u  cg 

Deep sequencing

45587 reads, 21.3 reads per million, 357 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133705920-133706016 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-337

• rno-mir-493: chr6: 133699509-133699592 [+]
• rno-mir-337: chr6: 133705920-133706016 [+]
• rno-mir-3544: chr6: 133705932-133706019 [-]
• rno-mir-540: chr6: 133706202-133706285 [+]
• rno-mir-665: chr6: 133706457-133706550 [+]
• rno-mir-431: chr6: 133711425-133711538 [+]
• rno-mir-433: chr6: 133712334-133712426 [+]
• rno-mir-127: chr6: 133713430-133713526 [+]
• rno-mir-3543-1: chr6: 133715345-133715459 [-]
• rno-mir-434-1: chr6: 133715378-133715458 [+]

Database links

• EntrezGene:Mir337
• miRBase Tracker:MI0000614

Mature sequence rno-miR-337-5p

• Accession: MIMAT0017035
• Previous IDs: rno-miR-337*
• Sequence: 29 - cggcgucaugcaggaguugau - 49
• Deep sequencing: 39331 reads, 351 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-337-5p
  • miRDB:rno-miR-337-5p

Mature sequence rno-miR-337-3p

• Accession: MIMAT0000577
• Previous IDs: rno-miR-337
• Sequence: 60 - uucagcuccuauaugaugccuuu - 82
• Deep sequencing: 6254 reads, 238 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-337-3p
  • miRDB:rno-miR-337-3p
  • microrna.org:rno-miR-337-3p

References

1. PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).