miRBase entry: rno-mir-335

Stem-loop rno-mir-335


Accession
MI0000612
Description
Rattus norvegicus rno-mir-335 precursor miRNA
Gene family
MIPF0000196; mir-335

Literature search
15 open access papers mention rno-mir-335
(140 sentences)

Sequence

130280 reads, 164 reads per million, 476 experiments
ucuuuugggcgggggUCAAGAGCAAUAACGAAAAAUGUuuguuuuucguaaaccguuuuucauuauugcuccugaccuccucucauuuguuauagcca
.....((((.((((((((.(((((((((.((((((((...((((.....)))))))))))).))))))))).)))))))).)))).............

Structure
--------ucuuu    c        A         C        Uuu    u 
             uggg gggggUCA GAGCAAUAA GAAAAAUG   guuu u
             |||| |||||||| ||||||||| ||||||||   |||| c
             acuc ccuccagu cucguuauu cuuuuugc   caaa g
accgauauuguuu    u        c         a        ---    u 


Annotation confidence High
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Genome context
Unknown

Database links

Mature rno-miR-335

Accession MIMAT0000575
Description Rattus norvegicus rno-miR-335 mature miRNA
Sequence 16 - UCAAGAGCAAUAACGAAAAAUGU - 38
Evidence experimental
cloned [1-2], Northern [1]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365