miRBase entry: rno-mir-328a

Stem-loop rno-mir-328a


Accession
MI0000602
Description
Rattus norvegicus rno-mir-328a precursor miRNA
Gene family
MIPF0000203; mir-328

Literature search
18 open access papers mention rno-mir-328a
(257 sentences)

Sequence

164233 reads, 919 reads per million, 495 experiments
uggggcaGGGGGGCAGGAGGGGCUCAgggagaaagcaucuacagcccCUGGCCCUCUCUGCCCUUCCGUccccuguccccaaau
(((((((((((((((((.(((((.(((((.....((.......)))))))))))).)))))).......)))))).)))))...

Structure
---     -      -------      A     U     agaaa  au 
   ugggg caGGGG       GGCAGG GGGGC CAggg     gc  c
   ||||| ||||||       |||||| ||||| |||||     ||  u
   acccc gucccc       CCGUCU UCCCG GUCcc     cg  a
uaa     u      UGCCUUC      C     -     -----  ac 


Annotation confidence High
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Genome context
chr19: 37263199-37263282 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-328a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-328a-5p

Accession MIMAT0017029
Description Rattus norvegicus rno-miR-328a-5p mature miRNA
Sequence 8 - GGGGGGCAGGAGGGGCUCA - 26
Evidence experimental
SOLiD [3]

Mature rno-miR-328a-3p

Accession MIMAT0000564
Description Rattus norvegicus rno-miR-328a-3p mature miRNA
Sequence 48 - CUGGCCCUCUCUGCCCUUCCGU - 69
Evidence experimental
cloned [1-2], Northern [1], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249