Stem-loop sequence mmu-mir-326

Accession

MI0000598 (change log)

Symbol

MGI:Mir326

Description

Mus musculus miR-326 stem-loop

Gene family

MIPF0000143; mir-326

Literature search

29 open access papers mention mmu-mir-326
(66 sentences)

Stem-loop

   cuc        guu          c       uugu  a     guuau 
5'    aucugucu   gggcuggggg agggccu    ga ggcgg     g
      ||||||||   |||||||||| |||||||    || |||||      
3'    uagacgga   ccugaccucc ucccggg    cu ccgcu     c
   auu        -gc          u       ---u  -     agacu 

Deep sequencing

15010 reads, 52.5 reads per million, 99 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 99552269-99552363 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000085875 ; Arrb1-001; intron 1

  OTTMUST00000085876 ; Arrb1-002; intron 1

  OTTMUST00000085880 ; Arrb1-006; intron 1

  OTTMUST00000085878 ; Arrb1-004; intron 1

  ENSMUST00000098266 ; Arrb1-001; intron 1

  ENSMUST00000032995 ; Arrb1-002; intron 1

  ENSMUST00000162404 ; Arrb1-006; intron 1

  ENSMUST00000161525 ; Arrb1-004; intron 1

  ENSMUST00000179755 ; Arrb1-201; intron 1

Database links

• EntrezGene:Mirn326
• MGI:Mir326
• RNAcentral:URS0000670596_10090
• miRBase Tracker:MI0000598

Mature sequence mmu-miR-326-5p

• Accession: MIMAT0017027
• Previous IDs: mmu-miR-326*
• Sequence: 20 - gggggcagggccuuugugaaggcg - 43
• Deep sequencing: 96 reads, 33 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00000AF446_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-326-5p
  • miRDB:mmu-miR-326-5p

Mature sequence mmu-miR-326-3p

• Accession: MIMAT0000559
• Previous IDs: mmu-miR-326
• Sequence: 60 - ccucugggcccuuccuccagu - 80
• Deep sequencing: 14611 reads, 97 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS000032B538_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-326-3p
  • miRDB:mmu-miR-326-3p
  • microrna.org:mmu-miR-326-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).