Stem-loop sequence mmu-mir-98

Accession

MI0000586 (change log)

Symbol

MGI:Mir98

Description

Mus musculus miR-98 stem-loop

Gene family

MIPF0000002; let-7

Literature search

61 open access papers mention mmu-mir-98
(614 sentences)

Stem-loop

   c   -      ug   u                 u    ---------      aggg 
5'  ugc acaugc  ggg gagguaguaaguuguau guug         uggggu    a
    ||| ||||||  ||| ||||||||||||||||| ||||         ||||||    u
3'  acg ugugug  ucc uuucaucauucaacaua caau         accccg    u
   u   g      gu   -                 u    agaagaaug      gauu 

Deep sequencing

48181330 reads, 9.19e+04 reads per million, 107 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 151913214-151913321 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000046396 ; Huwe1-001; intron 57

  OTTMUST00000046226 ; Huwe1-002; intron 59

  ENSMUST00000112622 ; Huwe1-001; intron 57

  ENSMUST00000026292 ; Huwe1-002; intron 59

Clustered miRNAs

< 10kb from mmu-mir-98

• mmu-let-7f-2: chrX: 151912346-151912428 [+]
• mmu-mir-98: chrX: 151913214-151913321 [+]

Database links

• EntrezGene:Mirn98
• MGI:Mir98
• RNAcentral:URS000075B3FA_10090
• miRBase Tracker:MI0000586

Mature sequence mmu-miR-98-5p

• Accession: MIMAT0000545
• Previous IDs: mmu-miR-98
• Sequence: 16 - ugagguaguaaguuguauuguu - 37
• Deep sequencing: 48179912 reads, 107 experiments
• Evidence: experimental; cloned [1], Illumina [2,4]
• Database links:
  • RNAcentral:URS00004E0808_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-98-5p
  • miRDB:mmu-miR-98-5p
  • microrna.org:mmu-miR-98-5p

Mature sequence mmu-miR-98-3p

• Accession: MIMAT0017023
• Previous IDs: mmu-miR-98*
• Sequence: 74 - cuauacaacuuacuacuuuccu - 95
• Deep sequencing: 1386 reads, 75 experiments
• Evidence: experimental; 454 [3], Illumina [4]
• Database links:
  • RNAcentral:URS000025E0BB_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-98-3p
  • miRDB:mmu-miR-98-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).