Stem-loop sequence mmu-mir-96

Accession

MI0000583 (change log)

Symbol

MGI:Mir96

Description

Mus musculus miR-96 stem-loop

Gene family

MIPF0000072; mir-96

Literature search

104 open access papers mention mmu-mir-96
(894 sentences)

Stem-loop

   c     cca       gg  g  u         g     uu     ug -  cu 
5'  cagua   ucugcuu  cc au uuggcacua cacau  uugcu  u gu  c
    |||||   |||||||  || || ||||||||| |||||  |||||  | ||   
3'  gucgu   gggcgaa  gg ua aaccgugau gugua  aacga  g cg  u
   c     --c       aa  g  u         -     cu     gu u  cc 

Deep sequencing

55515 reads, 211 reads per million, 98 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr6: 30169446-30169551 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-96

• mmu-mir-183: chr6: 30169668-30169737 [-]
• mmu-mir-96: chr6: 30169446-30169551 [-]
• mmu-mir-182: chr6: 30165918-30165992 [-]

Database links

• EntrezGene:Mirn96
• MGI:Mir96
• RNAcentral:URS000075A5B2_10090
• miRBase Tracker:MI0000583

Mature sequence mmu-miR-96-5p

• Accession: MIMAT0000541
• Previous IDs: mmu-miR-96
• Sequence: 24 - uuuggcacuagcacauuuuugcu - 46
• Deep sequencing: 55278 reads, 95 experiments
• Evidence: experimental; cloned [1-3], Northern [1], Illumina [4,6]
• Database links:
  • RNAcentral:URS000016FF9C_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-96-5p
  • miRDB:mmu-miR-96-5p
  • microrna.org:mmu-miR-96-5p

Mature sequence mmu-miR-96-3p

• Accession: MIMAT0017021
• Previous IDs: mmu-miR-96*
• Sequence: 66 - caaucauguguagugccaauau - 87
• Deep sequencing: 122 reads, 32 experiments
• Evidence: experimental; 454 [5], Illumina [6]
• Database links:
  • RNAcentral:URS00000154FC_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-96-3p
  • miRDB:mmu-miR-96-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
6. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).