miRBase entry: cbr-mir-86

Stem-loop cbr-mir-86


Accession
MI0000522
Description
Caenorhabditis briggsae cbr-mir-86 precursor miRNA
Gene family
MIPF0000247; mir-86

Literature search
1 open access papers mention cbr-mir-86
(2 sentences)

Sequence

cgagucaaugccguuUAAGUGAAUGCUUUGCCACAGUCuucgaucaugucacaugaagccugggcuuagauucacuuaggccggcguuccuugacuca
.(((((((((((((((((((((((.((..(((.(((.((((.............)))).))))))..))))))))))))).))))))....)))))).

Structure
c      ----      -           G  UU   A   U    gauca 
 gaguca    augccg uuUAAGUGAAU CU  GCC CAG Cuuc     u
 ||||||    |||||| ||||||||||| ||  ||| ||| ||||     g
 cucagu    ugcggc ggauucacuua ga  cgg guc gaag     u
a      uccu      c           -  uu   -   c    uacac 


Annotation confidence Not enough data
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Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrIII: 6376870-6376967 [-]

Database links

Mature cbr-miR-86

Accession MIMAT0000491
Description Caenorhabditis briggsae cbr-miR-86 mature miRNA
Sequence 16 - UAAGUGAAUGCUUUGCCACAGUC - 38
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862