miRBase entry: cbr-mir-79

Stem-loop cbr-mir-79


Accession
MI0000517
Description
Caenorhabditis briggsae cbr-mir-79 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
1 open access papers mention cbr-mir-79
(1 sentences)

Sequence

agaacauucuccgaucuuuggugauucagcuuaaaugauagaauucagacgucuucAUAAAGCUAGGUUACCAAAGCUcggcguuccaguucg
.((((...(.((((.(((((((((((.(((((..((((.(((.........))))))).))))).))))))))))).)))).).....)))).

Structure
a    --auu u    u           c     aa    u   auu 
 gaac     c ccga cuuuggugauu agcuu  auga aga   c
 ||||     | |||| ||||||||||| |||||  |||| |||   a
 cuug     g ggcU GAAACCAUUGG UCGAA  UAcu ucu   g
g    accuu c    C           A     -A    -   gca 


Annotation confidence Not enough data
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Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrI: 1849413-1849505 [+]

Database links

Mature cbr-miR-79

Accession MIMAT0000486
Description Caenorhabditis briggsae cbr-miR-79 mature miRNA
Sequence 57 - AUAAAGCUAGGUUACCAAAGCU - 78
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862