miRBase entry: cbr-mir-34

Stem-loop cbr-mir-34


Accession
MI0000494
Description
Caenorhabditis briggsae cbr-mir-34 precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

aagcacucauggucgugAGGCAGUGUGGUUAGCUGGUUGcauacacagguugacaacggcuaccuucacugccaccccgaacauguaguccuc
.((.(((((((.(((...(((((((.((.((((((.(((((..(...)..)).))))))))).)).)))))))....))).)))).))).)).

Structure
a  c   -    g   -ugA       U  U      G   -  ua a 
 ag acu caug ucg    GGCAGUG GG UAGCUG UUG ca  c  
 || ||| |||| |||    ||||||| || |||||| ||| ||  | c
 uc uga guac agc    ccgucac uc aucggc aac gu  g  
c  c   u    a   ccca       u  c      -   a  ug a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrX: 3832359-3832451 [+]

Database links

Mature cbr-miR-34

Accession MIMAT0000466
Description Caenorhabditis briggsae cbr-miR-34 mature miRNA
Sequence 18 - AGGCAGUGUGGUUAGCUGGUUG - 39
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862