miRBase entry: cbr-let-7

Stem-loop cbr-let-7


Accession
MI0000491
Description
Caenorhabditis briggsae cbr-let-7 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
4 open access papers mention cbr-let-7
(12 sentences)

Sequence

acugggguacggUGAGGUAGUAGGUUGUAUAGUUuagaauauuacucucggugaacuaugcaaguuucuaccucaccgaauaccagg
.((((.((.(((((((((((.((.((((((((((((...............)))))))))))).)).))))))))))).)).)))).

Structure
a    g  a           U  G            gaauau 
 cugg gu cggUGAGGUAG AG UUGUAUAGUUua      u
 |||| || ||||||||||| || ||||||||||||      a
 gacc ua gccacuccauc uu aacguaucaagu      c
g    a  a           u  g            ggcucu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrX: 18534121-18534207 [+]

Database links

Mature cbr-let-7

Accession MIMAT0000463
Description Caenorhabditis briggsae cbr-let-7 mature miRNA
Sequence 13 - UGAGGUAGUAGGUUGUAUAGUU - 34
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862

  2. PubMed ID: 11679672
    An extensive class of small RNAs in Caenorhabditis elegans
    "Lee RC, Ambros V"
    "Science (2001) 294:862-864