Stem-loop sequence dme-mir-317

AccessionMI0000429 (change log)
DescriptionDrosophila melanogaster miR-317 stem-loop
Gene family MIPF0000144; mir-317
Literature search

11 open access papers mention dme-mir-317
(22 sentences)

       --a  u         aua    --     c      u aa  a 
5' augc   ac gccauuggg   cacc  cugug ucgcuu g  ug a
   ||||   || |||||||||   ||||  ||||| |||||| |  || a
3' uacg   ug cggugaccu   gugg  gacac agugaa c  ac u
       guu  c         aug    uc     a      - ga  g 
Get sequence
Deep sequencing
602480 reads, 1.1e+04 reads per million, 49 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Release_6; GCA_000001215.4) Overlapping transcripts
chr3R: 10091126-10091217 [+]
Clustered miRNAs
< 10kb from dme-mir-317
dme-mir-317chr3R: 10091126-10091217 [+]
dme-mir-277chr3R: 10100022-10100121 [+]
dme-mir-34chr3R: 10100936-10101034 [+]
Database links

Mature sequence dme-miR-317-5p

Accession MIMAT0020843

14 - 


 - 35

Get sequence
Deep sequencing26808 reads, 49 experiments
Evidence not experimental
Database links

Mature sequence dme-miR-317-3p

Accession MIMAT0000409
Previous IDsdme-miR-317

56 - 


 - 79

Get sequence
Deep sequencing574126 reads, 49 experiments
Evidence experimental; cloned [1], 454 [2-3], Illumina [3]
Database links
Predicted targets


PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).