miRBase entry: dme-mir-314

Stem-loop dme-mir-314


Accession
MI0000426
Description
Drosophila melanogaster dme-mir-314 precursor miRNA
Gene family
MIPF0000246; mir-314

Literature search
3 open access papers mention dme-mir-314
(3 sentences)

Sequence

12179 reads, 653 reads per million, 46 experiments
ucGUAACUUGUGUGGCUUCGAACUUACCuaguugaggaaaacucccaugucggauuuuguuaccucuggUAUUCGAGCCAAUAAGUUCGG
.((.(((((((.(((((.((((..((((.((.(((.((((..(((......))))))).))).))..)))))))))))))))))))))).

Structure
u  U       G     U    CU    -u  u   g    ac   ca 
 cG AACUUGU UGGCU CGAA  UACC  ag uga gaaa  ucc  u
 || ||||||| ||||| ||||  ||||  || ||| ||||  |||   
 GC UUGAAUA ACCGA GCUU  AUgg  uc auu uuuu  agg  g
G  -       -     -    --    uc  c   g    --   cu 


Annotation confidence High
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Genome context
chr3L: 11773012-11773101 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-314
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-314-3p

Accession MIMAT0000406
Description Drosophila melanogaster dme-miR-314-3p mature miRNA
Sequence 70 - UAUUCGAGCCAAUAAGUUCGG - 90
Evidence experimental
cloned [1], 454 [2-3], Illumina [3]
Database links
Predicted targets

Mature dme-miR-314-5p

Accession MIMAT0020840
Description Drosophila melanogaster dme-miR-314-5p mature miRNA
Sequence 3 - GUAACUUGUGUGGCUUCGAACUUACC - 28
Evidence not_experimental
Database links

References

  1. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  2. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  3. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879