Stem-loop sequence dme-mir-310

Accession

MI0000422 (change log)

Description

Drosophila melanogaster miR-310 stem-loop

Gene family

MIPF0000566; mir-310

Literature search

18 open access papers mention dme-mir-310
(109 sentences)

Stem-loop

        -aa       c   g    uc     u       u   u 
5' aacau   acauuug agg cggg  gugug cagugua uua a
   |||||   ||||||| ||| ||||  ||||| ||||||| ||| u
3' uugua   uguaaau ucc gccc  cacac guuauau gau c
        acc       u   g    uu     -       c   u 

Deep sequencing

26954 reads, 1.72e+03 reads per million, 48 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 20583752-20583840 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dme-mir-310

• dme-mir-992: chr2R: 20585314-20585405 [-]
• dme-mir-991: chr2R: 20585200-20585295 [-]
• dme-mir-2498: chr2R: 20584709-20584820 [-]
• dme-mir-313: chr2R: 20584190-20584260 [-]
• dme-mir-312: chr2R: 20584056-20584121 [-]
• dme-mir-311: chr2R: 20583877-20583960 [-]
• dme-mir-310: chr2R: 20583752-20583840 [-]

Database links

• RNAcentral:URS000026A0FB_7227
• miRBase Tracker:MI0000422

Mature sequence dme-miR-310-5p

• Accession: MIMAT0020836
• Sequence: 16 - agggcgggucgugugucagugua - 38
• Deep sequencing: 308 reads, 32 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00004A7663_7227

Mature sequence dme-miR-310-3p

• Accession: MIMAT0000402
• Previous IDs: dme-miR-310
• Sequence: 54 - uauugcacacuucccggccuuu - 75
• Deep sequencing: 26644 reads, 48 experiments
• Evidence: experimental; Northern [1], 454 [2-3], Illumina [3]
• Database links:
  • RNAcentral:URS000029C35A_7227
• Predicted targets:
  • TargetScanFly:dme-miR-310
  • microrna.org:dme-miR-310-3p

References

1. PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
2. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
3. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).