Stem-loop sequence dme-mir-31a

Accession

MI0000420 (change log)

Description

Drosophila melanogaster miR-31a stem-loop

Gene family

MIPF0000064; mir-31

Literature search

8 open access papers mention dme-mir-31a
(35 sentences)

Stem-loop

           ua       a     u         ugacguugaaaa 
5' uccguugg  aauuggc agaug cggcauagc            g
   ||||||||  ||||||| ||||| |||||||||            c
3' agguaacu  uugacug ucuac gucguaucg            g
           ug       a     -         cgagaaguuuua 

Deep sequencing

1477616 reads, 8.22e+03 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 17783795-17783886 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000465605_7227
• miRBase Tracker:MI0000420

Mature sequence dme-miR-31a-5p

• Accession: MIMAT0000400
• Previous IDs: dme-miR-31a
• Sequence: 14 - uggcaagaugucggcauagcuga - 36
• Deep sequencing: 1476345 reads, 49 experiments
• Evidence: experimental; cloned [1], 454 [2-3], Illumina [3]
• Database links:
  • RNAcentral:URS00005FE42D_7227
• Predicted targets:
  • TargetScanFly:dme-miR-31a
  • microrna.org:dme-miR-31a-5p

Mature sequence dme-miR-31a-3p

• Accession: MIMAT0020834
• Sequence: 60 - cgcuaugcugcaucuagucagu - 81
• Deep sequencing: 1263 reads, 44 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00000BC661_7227

References

1. PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
2. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
3. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).