miRBase entry: dme-mir-304

Stem-loop dme-mir-304


Accession
MI0000411
Description
Drosophila melanogaster dme-mir-304 precursor miRNA
Gene family
MIPF0000308; mir-304

Literature search
6 open access papers mention dme-mir-304
(80 sentences)

Sequence

39938 reads, 1840 reads per million, 49 experiments
gcagcauugaaUAAUCUCAAUUUGUAAAUGUGAGcgguuuaagccauuugacgcacuCACUUUGCAAUUGGAGAUUGCUcgagacugc
((((..((((.(((((((...(((((((.(((((.(..((((.....))))..).))))))))))))...))))))).))))..))))

Structure
    ca    a       AAU       U     c gu    g 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g  uuaa c
||||  |||| |||||||   ||||||| ||||| |  |||| c
cguc  agcU GUUAGAG   AACGUUU CACuc c  aguu a
    ag    C       GUU       -     a gc    u 


Annotation confidence High
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Genome context
chrX: 15508959-15509046 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dme-mir-304
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-304-5p

Accession MIMAT0000390
Description Drosophila melanogaster dme-miR-304-5p mature miRNA
Sequence 12 - UAAUCUCAAUUUGUAAAUGUGAG - 34
Evidence experimental
cloned [1], 454 [2-3], Illumina [3]
Database links
Predicted targets

Mature dme-miR-304-3p

Accession MIMAT0020826
Description Drosophila melanogaster dme-miR-304-3p mature miRNA
Sequence 58 - CACUUUGCAAUUGGAGAUUGCU - 79
Evidence not_experimental
Database links

References

  1. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  2. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  3. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879