miRBase entry: mmu-mir-302a

Stem-loop mmu-mir-302a


Accession
MI0000402
Symbol
MGI: Mir302a
Description
Mus musculus mmu-mir-302a precursor miRNA
Gene family
MIPF0000071; mir-302

Literature search
85 open access papers mention mmu-mir-302a
(535 sentences)

Sequence

1893 reads, 136 reads per million, 20 experiments
ccaccACUUAAACGUGGUUGUACUUGCuuuagaccuaagaaagUAAGUGCUUCCAUGUUUUGGUGAugg
(((.((((.((((((((..(((((((((((.........)))))))))))..)))))))).)))).)))

Structure
   c    U        UU           aga 
cca cACU AAACGUGG  GUACUUGCuuu   c
||| |||| ||||||||  |||||||||||   c
ggu GUGG UUUGUACC  CGUGAAUgaaa   u
   A    U        UU           gaa 


Annotation confidence High
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Genome context
chr3: 127545496-127545564 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from mmu-mir-302a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-302a-5p

Accession MIMAT0004579
Description Mus musculus mmu-miR-302a-5p mature miRNA
Sequence 6 - ACUUAAACGUGGUUGUACUUGC - 27
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-302a-3p

Accession MIMAT0000380
Description Mus musculus mmu-miR-302a-3p mature miRNA
Sequence 44 - UAAGUGCUUCCAUGUUUUGGUGA - 66
Evidence experimental
cloned [1-2], Northern [1], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009