Stem-loop sequence mmu-mir-302a

Accession

MI0000402 (change log)

Previous IDs

mmu-mir-302

Symbol

MGI:Mir302a

Description

Mus musculus miR-302a stem-loop

Gene family

MIPF0000071; mir-302

Literature search

85 open access papers mention mmu-mir-302a
(522 sentences)

Stem-loop

      c    u        uu           aga 
5' cca cacu aaacgugg  guacuugcuuu   c
   ||| |||| ||||||||  |||||||||||   c
3' ggu gugg uuuguacc  cgugaaugaaa   u
      a    u        uu           gaa 

Deep sequencing

4504 reads, 61.9 reads per million, 21 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr3: 127545496-127545564 [+]
• Overlapping transcripts:

  antisense

  ENSMUST00000029588 ; Larp7-201; intron 8

Clustered miRNAs

< 10kb from mmu-mir-302a

• mmu-mir-302b: chr3: 127545228-127545301 [+]
• mmu-mir-302c: chr3: 127545363-127545430 [+]
• mmu-mir-302a: chr3: 127545496-127545564 [+]
• mmu-mir-302d: chr3: 127545624-127545689 [+]
• mmu-mir-367: chr3: 127545733-127545807 [+]

Database links

• EntrezGene:Mirn302a
• MGI:Mir302a
• RNAcentral:URS000069A308_10090
• miRBase Tracker:MI0000402

Mature sequence mmu-miR-302a-5p

• Accession: MIMAT0004579
• Previous IDs: mmu-miR-302a*
• Sequence: 6 - acuuaaacgugguuguacuugc - 27
• Deep sequencing: 320 reads, 14 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00002DA33E_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-302a-5p
  • miRDB:mmu-miR-302a-5p
  • microrna.org:mmu-miR-302a-5p

Mature sequence mmu-miR-302a-3p

• Accession: MIMAT0000380
• Previous IDs: mmu-miR-302;mmu-miR-302a
• Sequence: 44 - uaagugcuuccauguuuugguga - 66
• Deep sequencing: 4184 reads, 20 experiments
• Evidence: experimental; cloned [1-2], Northern [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS0000070CD2_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-302a-3p
  • miRDB:mmu-miR-302a-3p
  • microrna.org:mmu-miR-302a-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).