Stem-loop sequence mmu-mir-295

Accession

MI0000393 (change log)

Symbol

MGI:Mir295

Description

Mus musculus miR-295 stem-loop

Gene family

MIPF0000068; mir-290

Literature search

23 open access papers mention mmu-mir-295
(134 sentences)

Stem-loop

     u          u    -     ac     gac 
5' gg gagacucaaa gugg ggcac  uucug   u
   || |||||||||| |||| |||||  |||||   g
3' cc cucugaguuu cauc ucgug  aagau   u
     u          u    a     -a     aca 

Deep sequencing

90167 reads, 604 reads per million, 69 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 3220773-3220841 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-295

• mmu-mir-290a: chr7: 3218626-3218708 [+]
• mmu-mir-290b: chr7: 3218638-3218695 [-]
• mmu-mir-291a: chr7: 3218919-3219000 [+]
• mmu-mir-292a: chr7: 3219189-3219270 [+]
• mmu-mir-292b: chr7: 3219198-3219259 [-]
• mmu-mir-291b: chr7: 3219482-3219560 [+]
• mmu-mir-293: chr7: 3220343-3220422 [+]
• mmu-mir-294: chr7: 3220641-3220724 [+]
• mmu-mir-295: chr7: 3220773-3220841 [+]

Database links

• EntrezGene:Mir295
• MGI:Mir295
• RNAcentral:URS000075A3E5_10090
• miRBase Tracker:MI0000393

Mature sequence mmu-miR-295-5p

• Accession: MIMAT0004575
• Previous IDs: mmu-miR-295*
• Sequence: 7 - acucaaauguggggcacacuuc - 28
• Deep sequencing: 5542 reads, 26 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00001FBD73_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-295-5p
  • miRDB:mmu-miR-295-5p
  • microrna.org:mmu-miR-295-5p

Mature sequence mmu-miR-295-3p

• Accession: MIMAT0000373
• Previous IDs: mmu-miR-295
• Sequence: 43 - aaagugcuacuacuuuugagucu - 65
• Deep sequencing: 84605 reads, 63 experiments
• Evidence: experimental; cloned [1-2], Northern [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS00002DFEB9_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-295-3p
  • miRDB:mmu-miR-295-3p
  • microrna.org:mmu-miR-295-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).