Stem-loop sequence mmu-mir-294

Accession

MI0000392 (change log)

Symbol

MGI:Mir294

Description

Mus musculus miR-294 stem-loop

Gene family

MIPF0000068; mir-290

Literature search

28 open access papers mention mmu-mir-294
(216 sentences)

Stem-loop

   u       a  c    u     u      c  a   aa   u 
5'  uccauau gc auac caaaa ggaggc cu ucu  gcu u
    ||||||| || |||| ||||| |||||| || |||  |||  
3'  aggugua cg ugug guuuu ccuucg ga agg  uga u
   g       c  u    u     c      u  a   --   a 

Deep sequencing

53415 reads, 533 reads per million, 48 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 3220641-3220724 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-294

• mmu-mir-290a: chr7: 3218626-3218708 [+]
• mmu-mir-290b: chr7: 3218638-3218695 [-]
• mmu-mir-291a: chr7: 3218919-3219000 [+]
• mmu-mir-292a: chr7: 3219189-3219270 [+]
• mmu-mir-292b: chr7: 3219198-3219259 [-]
• mmu-mir-291b: chr7: 3219482-3219560 [+]
• mmu-mir-293: chr7: 3220343-3220422 [+]
• mmu-mir-294: chr7: 3220641-3220724 [+]
• mmu-mir-295: chr7: 3220773-3220841 [+]

Database links

• EntrezGene:Mir294
• MGI:Mir294
• RNAcentral:URS000075AF12_10090
• miRBase Tracker:MI0000392

Mature sequence mmu-miR-294-5p

• Accession: MIMAT0004574
• Previous IDs: mmu-miR-294*
• Sequence: 15 - acucaaaauggaggcccuaucu - 36
• Deep sequencing: 2937 reads, 17 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000011FA9E_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-294-5p
  • miRDB:mmu-miR-294-5p
  • microrna.org:mmu-miR-294-5p

Mature sequence mmu-miR-294-3p

• Accession: MIMAT0000372
• Previous IDs: mmu-miR-294
• Sequence: 51 - aaagugcuucccuuuugugugu - 72
• Deep sequencing: 50474 reads, 48 experiments
• Evidence: experimental; cloned [1-2], Northern [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS0000282A40_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-294-3p
  • miRDB:mmu-miR-294-3p
  • microrna.org:mmu-miR-294-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).