miRBase entry: dme-mir-288

Stem-loop dme-mir-288


Accession
MI0000384
Description
Drosophila melanogaster dme-mir-288 precursor miRNA
Gene family
MIPF0000223; mir-288


Sequence

2 reads, 2 reads per million, 2 experiments
cggccaugucguaauuagcggagcacggcaucgccggcgauaauuaaugacgguggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
(((((.((((((....((.((((..((((((.(((((((........((((....)))))))))))...)))))).)))).))..)))))).)))))

Structure
     a      aauu  c    ca      --c       auaauuaa    g 
cggcc ugucgu    ag ggag  cggcau   gccggcg        ugac g
||||| ||||||    || ||||  ||||||   |||||||        ||||  
gccgg acaGUA    UU CUUU  GCUGUA   Ugguugc        acug u
     c      --CU  A    -A      CUU       --------    g 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.

Genome context
chr2L: 20618366-20618462 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-288
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-288-3p

Accession MIMAT0000363
Description Drosophila melanogaster dme-miR-288-3p mature miRNA
Sequence 66 - UUUCAUGUCGAUUUCAUUUCAUG - 88
Evidence experimental
Northern [1]

References

  1. PubMed ID: 12844358
    Computational identification of Drosophila microRNA genes
    "Lai EC, Tomancak P, Williams RW, Rubin GM"
    "Genome Biol (2003) 4:R42