miRBase entry: dme-mir-287

Stem-loop dme-mir-287


Accession
MI0000381
Description
Drosophila melanogaster dme-mir-287 precursor miRNA
Gene family
MIPF0000224; mir-287

Literature search
1 open access papers mention dme-mir-287
(2 sentences)

Sequence

2 reads, 4 reads per million, 2 experiments
ggacgccggggauguauggguguguagggucugaaauuuugcacacauuuacaauaauuguaaaUGUGUUGAAAAUCGUUUGCACgacuguga
..(((((.(.......).))))).((.(((((((((((((..((((((((((((...))))))))))))..)))...)))).)).)))).)).

Structure
ggacgccggggauguaugggugug  g    -  -    ---   gc            u 
                        ua gguc ug aaau   uuu  acacauuuacaa  
                        || |||| || ||||   |||  |||||||||||| a
                        gu ucag AC UUUG   AAA  UGUGUaaauguu  
-----------------------a  g    C  G    CUA   GU            a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.

Genome context
chr2L: 17574610-17574702 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-287
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-287-3p

Accession MIMAT0000360
Description Drosophila melanogaster dme-miR-287-3p mature miRNA
Sequence 65 - UGUGUUGAAAAUCGUUUGCAC - 85
Evidence experimental
Northern [1]

References

  1. PubMed ID: 12844358
    Computational identification of Drosophila microRNA genes
    "Lai EC, Tomancak P, Williams RW, Rubin GM"
    "Genome Biol (2003) 4:R42